All entries for November 2009

November 18, 2009

H97 Genome Browser Portal Training

Gportal_thumb A two part training exercise in the use of the Agaricus bisporus var. bisporus H97 Genome Portal has been organised by the JGI. All collaborators involved in the H97 annotation effort are welcome to participate in the two 'dial-in' conference call sessions.


  • Session I -- Mon, Nov 23, 8:00--9:30am Pacific Standard Time (16:00 -- GMT) will cover use of the Browser, Protein and Annotation pages
  • Session II -- Wed, Nov 25 (8:00am PST / 16:00 GMT) will cover the KEGG/KOG/GO browsers, track editor and the clustering tools

    Participants may find it beneficial to view the manual curation exercises available on the JGI pages <here>

    Collaborators who would like to take part in this training (and have not already registered) should contact Mike C in advance of the event for further instructions

    November 05, 2009

    Revised Agaricus bisporus var. bisporus (H97) v2.0 genome assembly

    The JGI have announced the pre-release of an improved Agaricus bisporus var. bisporus (H97) 8.50x genome assembly, which integrates linkage mapping data.

    We are grateful to Anton Sonnenberg, Marie Foulongne and Rick Kerrigan for sharing data and their work mapping various markers to the v2 scaffolds.

    This H97 v2.0 genome browser is now available for community annotation inputs.

    h97_assembly_nov2009.jpg h97_annotation_nov2009.jpg

    In order to access the browser and make annotations, users will need to register with the JGI and the project team will need to approve the request. If you are interested in joining the annotation effort please contact the Agaricus genome team.

    November 2009

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