All 5 entries tagged Jb137-S8

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May 20, 2010

Public Release of Agaricus bisporus var. burnettii JB137–S8 Genome Sequence

The JGI have announced the public release of Agaricus bisporus var. burnettii JB137-S8 genome assembly and annotation, which can be accessed at the following URL:  http://jgi.doe.gov/Agabi_varbur_1

Annotation of the Agaricus bisporus var burnettii (v. 052010) assembly was produced through the JGI annotation pipeline, using a variety of homlogy-based and ab initio gene predictors. ESTs from Agaricus bisporus var bisporus were used. After filtering for EST support, completeness and homology support, a total of 11,289 genes were structurally and functionally annotated.

Statistics on the assembly and annotation of JB137-S8 in comparison to the Agaricus bisporus var bisporus H97 genome are shown in the JGI tables below. Further details can be found on the Info page: 
http://genome.jgi-psf.org/Agabi_varbur_1/Agabi_varbur_1.info.html
AssemblyStats_20100520 AnnotationStats_20100520
Community annotation and analysis of the Agaricus bisporus H97 and JB137-S8 genomes are continuing. Additional contributions are invariably welcomed, please contact MC if you would like to join the community effort.

Please respect the community rules and JGI data release policy for publication rights of the genome-wide analyses:
http://genome.jgi-psf.org/Agabi_varbur_1/Agabi_varbur_1.download.html


May 06, 2010

'MycoCosm' portal for JGI Fungal Genomes and Exploration of Fungal Diversity

Writing about web page http://genome.jgi-psf.org/pages/fungi/home.jsf

MycoCosm

Genome sequences for Agaricus bisporus var bisporus (H97) and var burnettii (JB137-S8) are available through the JGI's 'MycoCosm' portal. 

Fungal Genome sequences and other opportunities to explore Fungal Diversity are layered over a Fungal Tree of Life GUI. This resource should rapidly expand as fungal genomes continue to pour out of the JGI sequencing pipeline.

It's never been easier to explore fungal genomes: Go on, click on a branch!

jgi_logo

JGI_FGP_banner

May 04, 2010

Pre–release of Agaricus bisporus var. burnettii JB137–S8 genome

A pre-release of Agaricus bisporus var. burnettii JB137-S8 genome assembly and annotation is available to the community through the JGI portal.

This pre-release is currently restricted access and a JGI login is required. If you want to access the JB137-S8 portal contact MC for further instructions. It is expected that the Agaricus bisporus var. burnettii JB137-S8 genome
portal will available to the public after 14 May 2010.

Statistics on the assembly and annotation of JB137-S8 in comparison to the Agaricus bisporus var bisporus H97 genome are shown in the JGI tables below:

assemblystats_20100504.jpg

annotationstats_20100504.jpg


January 18, 2010

Agaricus bisporus var. burnettii JB137–S8 draft genome

gp_dotplot_2c.jpg The JGI have released a draft genome sequence for a second Agaricus homokaryon JB137-S8 (the tetrasporic Agaricus bisporus var. burnettii).
JB137-S8 genome was sequenced using 454/Illumina technology and assembled by comparisons with the lead H97 genome (Agaricus bisporus var. bisporus).

A brief summary of the JB137-S8 assembly and a dotplot comparison between the var. bisporus and var. burnettii genomes are attached.
jgi_logo JGI are currently progressing annotation of the JB137-S8 genome, after which the standard browser and tools for comparative analysis will become available. Collaborators interested in accessing JB137-S8 data prior to that time should contact MC for further information.
Agaricus bisporus var. burnettii JB137-S8

Main genome scaffold total:                    
2016
Main genome contig total:                      
2527
Main genome scaffold sequence total:           
32.6 MB
Main genome contig sequence total:             
31.2 MB
Main genome scaffold N/L50:                   
8/1.23 MB
Main genome contig N/L50:                      
39/0.163 MB
Number of scaffolds > 50 KB:                  
52
% main genome in scaffolds > 50 KB:            
87.9%

February 18, 2009

Genomic DNA of A. bisporus var. burnettii JB137–S8 sent to JGI

gDNA JB137-S8Thanks are due (again) to Rick Kerrigan and his team at Sylvan Inc. who have prepared and submitted  gDNA of Agaricus bisporus var. burnettii JB137-S8 to the JGI. This second homokaryon will most likely be sequenced using Illumina-454 technologies when the lead homokaryotic H97 genome reaches 8x coverage.

Further information on the Agaricus bisporus strains being sequenced in the JGI project is available in our original proposal, which is available at http://www.warwick.ac.uk/go/agaricusgenome





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