All entries for January 2010

January 18, 2010

Agaricus bisporus var. burnettii JB137–S8 draft genome

gp_dotplot_2c.jpg The JGI have released a draft genome sequence for a second Agaricus homokaryon JB137-S8 (the tetrasporic Agaricus bisporus var. burnettii).
JB137-S8 genome was sequenced using 454/Illumina technology and assembled by comparisons with the lead H97 genome (Agaricus bisporus var. bisporus).

A brief summary of the JB137-S8 assembly and a dotplot comparison between the var. bisporus and var. burnettii genomes are attached.
jgi_logo JGI are currently progressing annotation of the JB137-S8 genome, after which the standard browser and tools for comparative analysis will become available. Collaborators interested in accessing JB137-S8 data prior to that time should contact MC for further information.
Agaricus bisporus var. burnettii JB137-S8

Main genome scaffold total:                    
2016
Main genome contig total:                      
2527
Main genome scaffold sequence total:           
32.6 MB
Main genome contig sequence total:             
31.2 MB
Main genome scaffold N/L50:                   
8/1.23 MB
Main genome contig N/L50:                      
39/0.163 MB
Number of scaffolds > 50 KB:                  
52
% main genome in scaffolds > 50 KB:            
87.9%

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